PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63497.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ZF-HD
Protein Properties Length: 210aa    MW: 23300 Da    PI: 9.6546
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63497.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer993.5e-313894360
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                  +rY+eClkNhAas+G+h+vDGC+Efmps g egta  lkCaAC+CHRnFHR+eve e
   EPS63497.1 38 VARYRECLKNHAASMGAHVVDGCCEFMPS-GGEGTAGELKCAACDCHRNFHRKEVEGE 94
                 579*************************9.8899********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.7E-293991IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.3E-274091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-204094IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.2574190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.59E-18141207IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28142208IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-24150206IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
GGVGNPPPPP PPPAAAAVAV PRGSSSSNHP NAAAGSPVAR YRECLKNHAA SMGAHVVDGC  60
CEFMPSGGEG TAGELKCAAC DCHRNFHRKE VEGENPRPSA SYRPPFLGHH HHHQRHQHRP  120
ARPHNSGAAE SSSEDLHMFE SGHADNPSSK KRFRTKFSQE QKDQMQEFAE KLGWRMQKQD  180
EHQVQQFCER SGVKKQVFKV WMHNNKRLKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-221492061673ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099626.11e-66PREDICTED: zinc-finger homeodomain protein 6
RefseqXP_012469414.18e-68PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9FRL55e-55ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLS8DUD21e-155S8DUD2_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc02g085160.1.12e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-53homeobox protein 22
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]